Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 23406
Gene Symbol: COTL1
COTL1
0.060 GeneticVariation disease BEFREE Using [3H]glucosamine and [35S]methionine incorporation, anion exchange chromatography, semiquantitative radioactive RT-PCR, and a TGF-beta binding assay, we aimed to verify the presence of phenotypic differences between primary cultures of secondary palate (SP) fibroblasts from 2-year-old subjects with familial nonsyndromic cleft lip and/or palate (CLP-SP fibroblasts) and age-matched normal SP (N-SP) fibroblasts. 17225872 2007
Entrez Id: 810
Gene Symbol: CALML3
CALML3
0.060 GeneticVariation disease BEFREE Using [3H]glucosamine and [35S]methionine incorporation, anion exchange chromatography, semiquantitative radioactive RT-PCR, and a TGF-beta binding assay, we aimed to verify the presence of phenotypic differences between primary cultures of secondary palate (SP) fibroblasts from 2-year-old subjects with familial nonsyndromic cleft lip and/or palate (CLP-SP fibroblasts) and age-matched normal SP (N-SP) fibroblasts. 17225872 2007
Entrez Id: 8048
Gene Symbol: CSRP3
CSRP3
0.060 GeneticVariation disease BEFREE Using [3H]glucosamine and [35S]methionine incorporation, anion exchange chromatography, semiquantitative radioactive RT-PCR, and a TGF-beta binding assay, we aimed to verify the presence of phenotypic differences between primary cultures of secondary palate (SP) fibroblasts from 2-year-old subjects with familial nonsyndromic cleft lip and/or palate (CLP-SP fibroblasts) and age-matched normal SP (N-SP) fibroblasts. 17225872 2007
Entrez Id: 29102
Gene Symbol: DROSHA
DROSHA
0.010 GeneticVariation disease BEFREE Two SNPs were associated with the susceptibility of CL/P: rs10719 in DROSHA led to an increased risk of cleft lip with or without palate (CL/P) (GA/AA: p = .024, OR = 1.33, 95% CI = [1.04, 1.70]; GG + GA/AA: p = .037, OR = 1.29, 95% CI = [1.02, 1.63]), while rs493760 in DROSHA (CC/TT: p = .049, OR = 0.58, 95% CI = [0.34, 0.99]) could reduce the risk of CL/P. 28833944 2018
Entrez Id: 2260
Gene Symbol: FGFR1
FGFR1
0.430 GeneticVariation disease BEFREE Two novel heterozygous missense mutations in FGFR1, (NM_001174066): c.776G>A (p.G259E) and (NM_001174066): c.358C>T (p.R120C), were identified in a 23-year-old KS male with cleft lip and an 18-year-old KS patient with cleft lip and palate, dental agenesis, and high arched palate, respectively. 26199944 2015
Entrez Id: 81578
Gene Symbol: COL21A1
COL21A1
0.010 GeneticVariation disease BEFREE Two novel genes TOX3 and COL21A1 in large extended Malay families with nonsyndromic cleft lip and/or palate. 30924295 2019
Entrez Id: 27324
Gene Symbol: TOX3
TOX3
0.010 GeneticVariation disease BEFREE Two novel genes TOX3 and COL21A1 in large extended Malay families with nonsyndromic cleft lip and/or palate. 30924295 2019
Entrez Id: 7497
Gene Symbol: XCE
XCE
0.010 GeneticVariation disease LHGDN Triple X syndrome with rare phenotypic presentation. 18759093 2008
Entrez Id: 5818
Gene Symbol: NECTIN1
NECTIN1
0.640 Biomarker disease BEFREE Together with cleft lip and/or palate ectodermal dysplasia (CLPED1, or Zlotogora-Ogur syndrome) due to an impaired function of nectin-1, EDSS is the second known "nectinopathy" caused by mutations in a nectin adhesion molecule. 20691405 2010
Entrez Id: 7039
Gene Symbol: TGFA
TGFA
0.100 GeneticVariation disease BEFREE To investigate the association between the TGFA:c.3851T > C (rs11466285) and TGFA:c.3822G > A (rs3771523) single-nucleotide polymorphisms (SNPs) and nonsyndromic cleft lip and/or cleft palate (CL/P) with microarray in north China. 23742131 2014
Entrez Id: 4318
Gene Symbol: MMP9
MMP9
0.020 GeneticVariation disease BEFREE To evaluate the association of transforming growth factor β3 ( TGFβ3), muscle segment homeobox 1 ( MSX1), Metalloproteinases 3 ( MMP3), and MMP9 genes as candidates for nonsyndromic cleft lip and/or palate in an Indian population. 29738289 2019
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.700 Biomarker disease BEFREE To evaluate the association of transforming growth factor β3 ( TGFβ3), muscle segment homeobox 1 ( MSX1), Metalloproteinases 3 ( MMP3), and MMP9 genes as candidates for nonsyndromic cleft lip and/or palate in an Indian population. 29738289 2019
Entrez Id: 7043
Gene Symbol: TGFB3
TGFB3
0.050 Biomarker disease BEFREE To evaluate the association of transforming growth factor β3 ( TGFβ3), muscle segment homeobox 1 ( MSX1), Metalloproteinases 3 ( MMP3), and MMP9 genes as candidates for nonsyndromic cleft lip and/or palate in an Indian population. 29738289 2019
Entrez Id: 50945
Gene Symbol: TBX22
TBX22
0.310 GeneticVariation disease BEFREE This study has expanded the phenotypic spectrum of TBX22-related mutations to include dental anomalies and cleft lip. 21248356 2011
Entrez Id: 652
Gene Symbol: BMP4
BMP4
0.430 GeneticVariation disease BEFREE This study analyzed the association between the BMP4 gene polymorphisms rs762642, rs17563, and rs10130587 with the risk of cleft lip only (CLO), cleft palate only (CPO), and cleft lip with palate (CLP) in a population from South China. 29860186 2018
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 Biomarker disease BEFREE This study aimed to confirm the contribution of IRF6 to cleft lip with or without palate risk in additional Asian populations. 17438386 2007
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 SusceptibilityMutation disease ORPHANET This study aimed to confirm the contribution of IRF6 to cleft lip with or without palate risk in additional Asian populations. 17438386 2007
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.030 GeneticVariation disease BEFREE This meta-analysis was conducted with the aim of investigating the association between <i>WNT3</i> gene polymorphisms and non-syndromic cleft lip (CL) with or without cleft palate (NSCL/P) predisposition. 30355643 2018
Entrez Id: 5914
Gene Symbol: RARA
RARA
0.010 GeneticVariation disease BEFREE This locus, here named clf1 (cleft lip) maps to Chromosome (Chr) 11 to a region having linkage homology with human 17q21-24, supporting reports of association of human CL(P) with the retinoic acid receptor alpha (RARA) locus. 7767007 1995
Entrez Id: 51340
Gene Symbol: CRNKL1
CRNKL1
0.030 Biomarker disease BEFREE This locus, here named clf1 (cleft lip) maps to Chromosome (Chr) 11 to a region having linkage homology with human 17q21-24, supporting reports of association of human CL(P) with the retinoic acid receptor alpha (RARA) locus. 7767007 1995
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.390 GeneticVariation disease BEFREE This integrated analysis supports the previous finding of differences in DNA methylation across the two sides of cleft lip and further suggests a possible role of MTHFR c.677C>T genotype in establishing this difference. 31161688 2019
Entrez Id: 3664
Gene Symbol: IRF6
IRF6
0.900 GeneticVariation disease BEFREE These results suggest that IRF6 rs2235375 SNP play a major role in the pathogenesis and risk of developing non-syndromic cleft lip with or without palate. 28712851 2018
Entrez Id: 2066
Gene Symbol: ERBB4
ERBB4
0.010 AlteredExpression disease BEFREE These results suggest erbB4 expression may be associated with normal primary palatogenesis of mice and, conversely, cleft lip may be associated with a deficiency of erbB4 expression during primary palate formation in mice. 9563567 1998
Entrez Id: 8048
Gene Symbol: CSRP3
CSRP3
0.060 Biomarker disease BEFREE There were 17 males and 16 females of Caucasian origin, ranging from 3 to 18 years (15 with cleft lip and palate [CLP], 10 with cleft lip [CL], and 8 with cleft palate [CP]), collected from five craniofacial centers (United States and Canada). 15516164 2004
Entrez Id: 23406
Gene Symbol: COTL1
COTL1
0.060 Biomarker disease BEFREE There were 17 males and 16 females of Caucasian origin, ranging from 3 to 18 years (15 with cleft lip and palate [CLP], 10 with cleft lip [CL], and 8 with cleft palate [CP]), collected from five craniofacial centers (United States and Canada). 15516164 2004